Local Research. Global Impact.™

Four Diamonds’ research gives hope to kids everywhere. Here’s some of our research that’s been recently published:

‘Guardian of the Genome’ and the ‘WASp’ team up to repair DNA damage

DNA replication and repair happens thousands of times a day in the human body and most of the time, people don’t notice when things go wrong thanks to the work of Replication protein A (RPA), the ‘guardian of the genome.’ Scientists previously believed this protein ‘hero’ responsible for repairing damaged DNA in human cells worked alone, but a new study by Penn State College of Medicine researchers showed that RPA works with an ally called the WAS protein (WASp) to ‘save the day’ and prevent potential cancers from developing.

The researchers discovered these findings after observing that patients with Wiskott-Aldrich syndrome (WAS) — a genetic disorder that causes a deficiency of WASp — not only had suppressed immune system function, but in some cases, also developed cancer.

Dr. Yatin Vyas, professor and chair of the Department of Pediatrics at Penn State College of Medicine and pediatrician-in-chief at Penn State Health Children’s Hospital, conducted prior research which revealed that WASp functions within an apparatus that is designed to prevent cancer formation. As a result, some cancer patients had tumor cells with a WASp gene mutation. These observations led him to hypothesize that WASp might play a direct role in DNA damage repair.

Replication protein A (RPA) forms a complex with WASp at replication forks (red) within the nucleus (blue) of a human cell during DNA replication stress.

“WAS is very rare — less than 10 out of every 1 million boys has the condition,” said Vyas, who is also the Children’s Miracle Network and Four Diamonds Endowed Chair. “Knowing that children with WAS were developing cancers and also observing WASp mutations in tumor cells of cancer patients, we decided to investigate whether WASp plays a role in DNA replication and repair.”

The researchers conducted protein-protein binding experiments with purified human WASp and RPA and discovered that WASp forms a complex with RPA. Further tests revealed that WASp ‘directs’ RPA to the site where single DNA strands are broken and need to be repaired. According to Vyas, without the complex, DNA repair happens by secondary mechanisms, which can lead to cancer. This novel function of WASp is conserved through evolution, from yeast to humans. The results of the study were published in Nature Communications.

In the future, Vyas and colleagues will continue to study how their observations about this RPA-WASp complex formation can be applied to treating cancer patients. Vyas said it is possible that gene therapy or stem cell therapy could restore WASp function and may prevent further tumor growth and spread. He also mentioned the possibility of using WASp dysfunction as a biomarker for identifying patients at risk for autoimmune diseases and cancers.

“This complex we’ve discovered plays a critical role in preventing the development of cancers during DNA replication,” said Vyas. “Translating this discovery from bench to bedside could mean that someday we have another tool for predicting and treating cancers and autoimmune diseases.”

Seong-Su Han, Kuo-Kuang Wen of Penn State College of Medicine and formerly of the University of Iowa Stead Family Children’s Hospital; María García-Rubio and Andrés Aguilera of University of Seville-CSIC-University Pablo de Olavide; Marc Wold of University of Iowa Carver College of Medicine; and Wojciech Niedzwiedz of the Institute of Cancer Research also contributed to this research. The authors declare no conflicts of interest.

This research was supported in part by the National Institutes of Health, the ICR Intramural Grant and Cancer Research UK Programme, the European Research Council and the Spanish Ministry of Science and Innovation grant, the University of Iowa Dance Marathon research award, the Research Bridge Award from the Carver College of Medicine University of Iowa and endowments from the Mary Joy & Jerre Stead Foundation and from Four Diamonds and Children’s Miracle Network. The content is solely the responsibility of the authors and does not necessarily represent the official views of the study sponsors.   

Researchers uncover genetic ‘bridge’ to leukemia progression

Four Diamonds researcher Suming Huang uses a suspension bridge to describe the genome structure that contributes to leukemia development.

For cells to thrive, a complex network of three-dimensional structures assembles to read, copy and produce the genetic materials (DNA) needed for cellular function. Understanding how these structures form, and what happens when things go wrong, is an everyday endeavor for researchers at Penn State College of Medicine and Penn State Cancer Institute.

In the lab of Four Diamonds Epigenetics Program researcher Suming Huang, professor of pediatrics, a team of scientists is studying how certain hard‐to‐treat subtypes of acute myeloid leukemia (AML) develop as a result of alterations in cellular genome structures, called topologically associated domains (TADs). Huang is investigating how long noncoding ribonucleic acid (lncRNA) affects the function of the human genome building block, called CCCTC-binding factor (CTCF), in the formation of these topological structures. According to his latest study, which was published in Molecular Cell, a lncRNA called HOTTIP plays a key role in the formation of R-loops with DNA strands, which maintain the structural integrity needed for downstream biological processes that allow leukemia to develop and progress.

“Imagine a suspension bridge,” said Huang, a Cancer Institute researcher. “The bridge itself is the TAD that allows access to the production line for a molecule called beta-catenin, which prior research has shown allows leukemia cells to develop. The bridge is assembled and supported by the towers (CTCF) and cables (HOTTIP) and the cables are anchored in place by the R-loops. Our lab demonstrated that R-loop formation is facilitated by HOTTIP.”

To arrive at their conclusion, the researchers conducted experiments where mice were implanted with AML cells. Some of the mice were implanted with genetically altered AML cells that were unable to form R-loops in the TAD encompassing beta-catenin region, whereas another set were implanted with AML cells that were able to form R-loops in this region. On average, the mice with the cells that couldn’t form R-loops had a longer period of survival, which demonstrated to the team that R-loops do play a key role in leukemia development.

“Without the ‘anchors’, the genetic ‘bridge’ cannot form,” Huang said. “Understanding how genome structure contributes to leukemia development might someday allow us to identify therapeutic targets and develop next‐generation therapies.”

Huacheng Luo, Melanie Eshelman, Qian Lai, Julia Lesperance, Xiaoyan Ma, Nicholas Cesari and Yi Qiu of Penn State College of Medicine; Ganqian Zhu, Shi Chen, Feng-Chun Yang and Mingjiang Xu of University of Texas Health Science Center; Tsz Kan Fung, Bernd Zeisig and Chi Wai Eric So of King’s College London; Fei Wang and Baoan Chen of Southeast University Medical School; Christopher Cogle of University of Florida College of Medicine; and Bing Xu of The First Affiliated Hospital of Xiamen University also contributed to this research. The authors declare no conflicts of interest.

This research was supported by grants from the National Institutes of Health, a CRUK program grant, a Blood Cancer UK program continuity grant, a Cancer Prevention/Research Institute of Texas grant and Four Diamonds. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH or other funders.